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The LHC data on event-by-event harmonic flow coefficients measured in PbPb collisions at center-of-mass energy 2.76 TeV per nucleon pair are analyzed and interpreted within the HYDJET++ model. To compare the model results with the experimental data the unfolding procedure is employed. The essentially dynamical origin of the flow fluctuations in hydro-inspired freeze-out approach has been established. It is shown that the simple modification of the model via introducing the distribution over spatial anisotropy parameters permits HYDJET++ to reproduce both elliptic and triangular flow fluctuations and related to it eccentricity fluctuations of the initial state at the LHC energy.