ИСТИНА

Favorov AV

Соавторы: Миронов А.А., Makeev V., Гельфанд М.С., Neverov A.D., Базыкин Г.А., Пензар Д.Д., Vorontsov I.E., Zakharova M.Y., Белогуров А.А., Габибов А.Г., Bykova N., Denisov S.V., Popova A.V. показать полностью..., Stolyarova A., Sutormin R., Баулин Е.Ф., Кабилов М.Р., Кулаковский И.В., Ломакин Я.А., Птушенко В.В., Смирнов И.В., Тупикин А.А., Фридман М.В., Abramov S., Alvarez-Figueroa M., Bobik T.V., Bossini-Castillo L., Boytsov A., Bykova D., Bykova D., Chaikina M.V., Christoph Z., Chudakov D.M., Chulanov V., Church G.M., Cope L., De Moor B., Domanska D., Dubina M.V., Eskin E., Fertig E.J., Fu Y.T., Gogia G.G., Gundersen S., Guryleva M.V., Kanduri C., Karandashova K.K., Kolmykov S.K., Kolpakov F., Kolpakov F.A., Kulakovskiy I.V., Kurmangaliyev Y.Z., Lehmann K.C., Levshin I.B., Li N., Medvedeva Y., Mikelov A.I., Mularoni L., Myznikova A., Niranjan T., Noble W.S., Nurtdinov R.N., Nuzhdin S.V., Pavesi G., Pesole G., Polishchuk M., Pyrkov A., Quinlan A.R., Ravcheev D.A., Salomon M.P., Sandve G.K., Sheffield N.C., Shilovsky I.P., Simovski B., Sitnik V.V., Staroverov D.B., Stepanov A.V., Sykulev Y., Thijs G., Tompa M., Vandenbogaert M., Vlassov V., Voiciehovskaya Y., Weng Z.P., Wheelan S., Workman C., Yevshin I., van Helden J., Абрамов С.С., Бойко А.Е., Борцов А.А., Быкова Н.А., Власов В.В., Дронина М.А., Захарова М.Н., Звягин И., Зиганшин Р.Х., Зинкевич А.О., Иллариошкин С.Н., Калмыков С.А., Киосак Д.В., Кондрашов А.С., Мамедов А.Э., Мухина В.С., Набиева Е.Р., Никулова А.А., Овчинникова Л.А., Первушин Д.Д., Пономаренко Н.А., Решетов Д.А., Рубцов Ю.П., Сафина К.Р., Сергеева М.Г., Симанив Т.О., Ставровская Е.Д., Тикунова Н.В., Фаворова О.О., Филимонова И., Хаитов М.Р., Чистяков Д.В., иванова м.и.

22 статьи, 1 доклад на конференции

Количество цитирований статей в журналах по данным Web of Science: 1135, Scopus: 1292

IstinaResearcherID (IRID): 377640

Деятельность

• Статьи в журналах

  • • 2022 Deconvolution of B cell receptor repertoire in multiple sclerosis patients revealed a delay in tBreg maturation
    • Lomakin Yakov A., Zvyagin Ivan V., Ovchinnikova Leyla A., Kabilov Marsel R., Staroverov Dmitriy B., Mikelov Artem, Tupikin Alexey E., Zakharova Maria Y., Bykova Nadezda A., Mukhina Vera S., Favorov Alexander V., Ivanova Maria, Simaniv Taras, Rubtsov Yury P., Chudakov Dmitriy M., Zakharova Maria N., Illarioshkin Sergey N., Belogurov Alexey A., Gabibov Alexander G.
    • в журнале Frontiers in immunology, издательство Frontiers Research Foundation] ([Lausanne, Switzerland), том 13 DOI
  • • 2022 Investigation of the Role of PUFA Metabolism in Breast Cancer Using a Rank-Based Random Forest Algorithm
    • Guryleva Mariia V., Penzar Dmitry D., Chistyakov Dmitry V., Mironov Andrey A., Favorov Alexander V., Sergeeva Marina G.
    • в журнале Cancers, издательство MDPI (Basel, Switzerland), том 14, № 19 DOI
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    • 2021 Landscape of allele-specific transcription factor binding in the human genome
    • Abramov Sergey, Boytsov Alexandr, Bykova Daria, Penzar Dmitry D., Yevshin Ivan, Kolmykov Semyon K., Fridman Marina V., Favorov Alexander V., Vorontsov Ilya E., Baulin Eugene, Kolpakov Fedor, Makeev Vsevolod J., Kulakovskiy Ivan V.
    • в журнале Nature communications, издательство Nature Pub. Group (United Kingdom), том 12, № 1 DOI
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    • 2020 Landscape of allele-specific transcription factor binding in the human genome
    • Abramov Sergey, Boytsov Alexandr, Bykova Dariia, Penzar Dmitry D., Yevshin Ivan, Kolmykov Semyon K., Fridman Marina V., Favorov Alexander V., Vorontsov Ilya E., Baulin Eugene, Kolpakov Fedor, Makeev Vsevolod J., Kulakovskiy Ivan V.
    • в журнале bioRxiv (The preprint server for biology) DOI
  • • 2020 Protective Allele for Multiple Sclerosis HLA-DRB1*01:01 Provides Kinetic Discrimination of Myelin and Exogenous Antigenic Peptides
    • Mamedov Azad, Vorobyeva Nadezhda, Filimonova Ioanna, Zakharova Maria, Kiselev Ivan, Bashinskaya Vitalina, Baulina Natalia, Boyko Alexey, Favorov Alexander, Kulakova Olga, Ziganshin Rustam, Smirnov Ivan, Poroshina Alina, Shilovskiy Igor, Khaitov Musa, Sykulev Yuri, Favorova Olga, Vlassov Valentin, Gabibov Alexander, Belogurov Alexey
    • в журнале Frontiers in immunology, издательство Frontiers Research Foundation] ([Lausanne, Switzerland), том 10 DOI
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    • 2020 Senescence and entrenchment in evolution of amino acid sites
    • Stolyarova A.V., Nabieva E., Ptushenko V.V., Favorov A.V., Popova A.V., Neverov A.D., Bazykin G.A.
    • в журнале Nature communications, издательство Nature Pub. Group (United Kingdom), том 11, с. 1-11 DOI
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    • 2019 Allele-specific nonstationarity in evolution of influenza A virus surface proteins
    • Popova A.V., Safina K.R., Ptushenko V.V., Stolyarova A.V., Favorov A.V., Neverov A.D., Bazykin G.A.
    • в журнале Proceedings of the National Academy of Sciences of the United States of America, издательство National Academy of Sciences (United States), том 42, № 116, с. 21104-21112 DOI
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    • 2019 What Do Neighbors Tell About You: The Local Context of Cis-Regulatory Modules Complicates Prediction of Regulatory Variants
    • Penzar Dmitry D., Zinkevich Arsenii O., Vorontsov Ilya E., Sitnik Vasily V., Favorov Alexander V., Makeev Vsevolod J., Kulakovskiy Ivan V.
    • в журнале Frontiers in genetics, издательство Frontiers Research Foundation. (Lausanne, Switzerland), том 10, с. 1078 DOI
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    • 2018 Coloc-stats: a unified web interface to perform colocalization analysis of genomic features
    • Simovski Boris, Kanduri Chakravarthi, Gundersen Sveinung, Titov Dmytro, Domanska Diana, Bock Christoph, Bossini-Castillo Lara, Chikina Maria, Favorov Alexander, Layer Ryan M., Mironov Andrey A., Quinlan Aaron R., Sheffield Nathan C., Trynka Gosia, Sandve Geir K.
    • в журнале Nucleic Acids Research, издательство Oxford University Press (United Kingdom), том 46, № W1, с. W186-W193 DOI
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    • 2017 StereoGene: rapid estimation of genome-wide correlation of continuous or interval feature data
    • Stavrovskaya E.D., Niranjan T., Fertig E.J., Wheelan S.J., Favorov A.V., Mironov A.A.
    • в журнале Bioinformatics, издательство Oxford University Press (United Kingdom), том 33, № 20, с. 3158-3165 DOI
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    • 2015 Correlated Evolution of Nucleotide Positions within Splice Sites in Mammals
    • Denisov S., Bazykin G., Favorov A., Mironov A., Gelfand M.
    • в журнале PLoS ONE, издательство Public Library of Science (United States), том 10, № 12, с. e0144388 DOI
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    • 2015 Natural variation of gene models in Drosophila melanogaster
    • Kurmangaliyev Y.Z., Favorov A.V., Osman N.M., Lehmann K.V., Campo D., Salomon M.P., Tower J., Gelfand M.S., Nuzhdin S.V.
    • в журнале BMC Genomics, издательство BioMed Central (London), том 16, с. 198 DOI
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    • 2014 Heavy-light chain interrelations of MS-associated immunoglobulins probed by deep sequencing and rational variation
    • Lomakin YA, Zakharova MY, Stepanov AV, Dronina MA, Smirnov IV, Bobik TV, Pyrkov AY, Tikunova NV, Sharanova SN, Boitsov VM, Vyazmin SY, Kabilov MR, Tupikin AE, Krasnov AN, Bykova NA, Medvedeva YA, Fridman MV, Favorov AV, Ponomarenko NA, Dubina MV, Boyko AN, Vlassov VV, Belogurov AA Jr, Gabibov AG
    • в журнале Molecular Immunology, издательство Pergamon Press (United States), том 62, № 2, с. 305-314 DOI
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    • 2014 Weak negative and positive selection and the drift load at splice sites
    • Denisov Stepan V., Bazykin Georgii A., Sutormin Roman, Favorov Alexander V., Mironov Andrey A., Gelfand Mikhail S., Kondrashov Alexey S.
    • в журнале Genome biology and evolution, издательство Oxford University Press (United Kingdom), том 6, № 6, с. 1437-1447 DOI
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    • 2013 Base-calling algorithm with vocabulary (BCV) method for analyzing population sequencing chromatograms
    • Fantin YS, Neverov AD, Favorov AV, Alvarez-Figueroa MV, Braslavskaya SI, Gordukova MA, Karandashova Kuleshov KV, Myznikova AI, Polishchuk MS, Reshetov DA, Voiciehovskaya YA, Mironov AA, Chulanov VP
    • в журнале PLoS ONE, издательство Public Library of Science (United States), том 8, № 1, с. e54835 DOI
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    • 2013 Hidden Markov models for evolution and comparative genomics analysis
    • Bykova NA, Favorov AV, Mironov AA
    • в журнале PLoS ONE, издательство Public Library of Science (United States), том 7, № 8, с. e65012 DOI
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    • 2012 CORECLUST: identification of the conserved CRM grammar together with prediction of gene regulation
    • Nikulova AA, Favorov AV, Sutormin RA, Makeev VJ, Mironov AA
    • в журнале Nucleic Acids Research, издательство Oxford University Press (United Kingdom), том 15 DOI
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    • 2012 Exploring massive, genome scale datasets with the GenometriCorr package
    • Favorov A., Mularoni L., Cope LM, Medvedeva Y., Mironov AA, Makeev VJ, Wheelan SJ
    • в журнале PLoS Computational Biology, издательство Public Library of Science (United States), том 8, № 5, с. e1002529 DOI
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    • 2007 Conserved and species-specific alternative splicing in mammalian genomes
    • Nurtdinov Ramil N., Neverov Alexey D., Favorov Alexander V., Mironov Andrey A., Gelfand Mikhail S.
    • в журнале BMC Evolutionary Biology, издательство BioMed Central (London), том 7
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    • 2006 RNAKinetics: a web server that models secondary structure kinetics of an elongating RNA
    • Danilova L.V., Pervouchine D.D., Favorov A.V., Mironov A.A.
    • в журнале Journal of Bioinformatics and Computational Biology, издательство Imperial College Press (United Kingdom), том 4, № 2, с. 589-596
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    • 2005 A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length
    • Favorov A.V., Gelfand M.S., Gerasimova A.V., Ravcheev D.A., Mironov A.A., Makeev V.J.
    • в журнале Bioinformatics, издательство Oxford University Press (United Kingdom), том 21, № 10, с. 2240-2245
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    • 2005 Assessing computational tools for the discovery of transcription factor binding sites
    • Tompa M., Li N., Bailey T.L., Church G.M., De Moor B., Eskin E., Favorov A.V., Frith M.C., Fu Y.T., Kent W.J., Makeev V.J., Mironov A.A., Noble W.S., Pavesi G., Pesole G., Regnier M., Simonis N., Sinha S., Thijs G., van Helden J., Vandenbogaert M., Weng Z.P., Workman C., Ye C., Zhu Z.
    • в журнале Nature Biotechnology, издательство Nature Publishing Group (United Kingdom), том 23, № 1, с. 137-144

• Доклады на конференциях

  • • 2020 IndiForest: machine learning on indicators and ranks for cancer diagnosis (Стендовый)
    • Авторы: Guryleva Mariia V., Penzar Dmitry, Sergeeva Marina G., Favorov Alexander V.
    • German Conference on Bioinformatics (GCB) 2020, Heidelberg, Германия, 16-19 сентября 2020